PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ONIVA01G06760.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 392aa    MW: 41806.9 Da    PI: 6.8449
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ONIVA01G06760.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.54.8e-08124144526
                      --SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                       C++f++ G Ck+Gd C +aHg
  ONIVA01G06760.1 124 ACPDFRK-GGCKRGDACEYAHG 144
                      7******.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.4E-5119145IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.103120146IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-5123146IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-6124144IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.258154178IPR000571Zinc finger, CCCH-type
SMARTSM0035612154177IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MMMMGEGVSS VPPWSHLPVS GVDVLGGGGG GGGGGDEMTP YLIAALRDYL PANDVGVGAD  60
DEEEAAAMAA AVDAYACDEF RMYEFKVRRC ARGRSHDWTE CPFAHPGEKA RRRDPRKYHY  120
SGTACPDFRK GGCKRGDACE YAHGVFECWL HPARYRTQPC KDGTACRRRV CFFAHTPDQL  180
RVLPAQQSSP RSVASSPLAE SYDGSPLRRQ AFESYLTKTI MSSSPTSTLM SPPKSPPSES  240
PPLSPDGAAA IRRGSWPGVG SPVNDVLASF RQLRLNKVKS SPSGGWSYPS SSAVYGSPKA  300
ATGLYSLPTT PLASTATVTT ASSFMPNLEP LDLGLIGDEE PVQRVESGRA LREKVFERLS  360
RDGAISGDAT AFAAAATAGV GLDVDWVSDL IN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1007700.0AK100770.1 Oryza sativa Japonica Group cDNA clone:J023119N23, full insert sequence.
GenBankAP0027460.0AP002746.2 Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0671B11.
GenBankAP0149570.0AP014957.1 Oryza sativa Japonica Group DNA, chromosome 1, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015621800.10.0PREDICTED: zinc finger CCCH domain-containing protein 2
SwissprotQ9FU270.0C3H2_ORYSJ; Zinc finger CCCH domain-containing protein 2
TrEMBLA0A0E0FHH10.0A0A0E0FHH1_ORYNI; Uncharacterized protein
STRINGLOC_Os01g09620.10.0(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.11e-78C3H family protein